Software

I have started to make the code I write publicly available in git repositories. The software published there ranges in complexity, but I very much agree with the stance that sharing code whenever possible strengthens academia.

Points of (possible) interest include:

• although I’m not the main developer, I’ve been known to hack on NUFEB, an agent based model of microbial communities
• an application to create sensibly formatted text from a commercial CFD program’s exported data
• an ImageJ macro and example code used to analyze activated sludge particle morphologies
• a Jupyter notebook-based system to interactively teach basic metagenomic data analysis and visualization.

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